IL_8OIR_085

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8OIR|1|B8|A|1256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIR_085 not in the Motif Atlas

Homologous match to IL_4WF9_081

Geometric discrepancy: 0.0799

The information below is about IL_4WF9_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8OIR|1|B8|G|1063
8OIR|1|B8|A|1064
*
8OIR|1|B8|U|1255
8OIR|1|B8|A|1256
8OIR|1|B8|C|1257
8OIR|1|B8|C|1258

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AG

P-site Met-tRNA(Met)

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain Bu

39S ribosomal protein L45, mitochondrial