IL_8OIS_048

3D structure

PDB id

8OIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

G(PSU)UG*CUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIS_048 not in the Motif Atlas

Geometric match to IL_280D_001

Geometric discrepancy: 0.2645

The information below is about IL_280D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8OIS|1|AG|G|45
8OIS|1|AG|PSU|46
8OIS|1|AG|U|47
8OIS|1|AG|G|48
*
8OIS|1|AG|C|57
8OIS|1|AG|U|58
8OIS|1|AG|U|59
8OIS|1|AG|C|60

Current chains

Chain AG

P-site Met-tRNA(Met)

Nearby chains