IL_8OIT_020

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAG*CAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIT_020 not in the Motif Atlas

Geometric match to IL_2ZI0_001

Geometric discrepancy: 0.199

The information below is about IL_2ZI0_001

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8OIT|1|B8|U|498
8OIT|1|B8|A|499
8OIT|1|B8|G|500
*
8OIT|1|B8|C|520
8OIT|1|B8|A|521
8OIT|1|B8|A|522

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BP

39S ribosomal protein L10, mitochondrial

Chain BQ

39S ribosomal protein L11, mitochondrial

Chain Bc

39S ribosomal protein L54, mitochondrial