IL_8OIT_057

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCUGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIT_057 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.174

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8OIT|1|B8|C|1449
8OIT|1|B8|C|1450
8OIT|1|B8|C|1451
8OIT|1|B8|U|1452
8OIT|1|B8|G|1453
8OIT|1|B8|U|1454
8OIT|1|B8|A|1455
8OIT|1|B8|C|1456
*
8OIT|1|B8|G|1461
8OIT|1|B8|G|1462
8OIT|1|B8|A|1463
8OIT|1|B8|C|1464
8OIT|1|B8|A|1465
8OIT|1|B8|A|1466
8OIT|1|B8|G|1467

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BS

39S ribosomal protein L14, mitochondrial