IL_8OJ0_113

3D structure

PDB id

8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8OJ0|1|5|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ0_113 not in the Motif Atlas

Homologous match to IL_8P9A_322

Geometric discrepancy: 0.1602

The information below is about IL_8P9A_322

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

8OJ0|1|5|G|3916
8OJ0|1|5|A|3917
*
8OJ0|1|5|U|4384
8OJ0|1|5|A|4385
8OJ0|1|5|C|4386
8OJ0|1|5|C|4387

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

E3 UFM1-protein ligase 1

Chain LA

60S ribosomal protein L8