IL_8OJ0_172

3D structure

PDB id

8OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAC*GUGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ0_172 not in the Motif Atlas

Geometric match to IL_8P9A_349

Geometric discrepancy: 0.358

The information below is about IL_8P9A_349

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8OJ0|1|5|C|1172
8OJ0|1|5|G|1173
8OJ0|1|5|G|1174
8OJ0|1|5|A|1175
8OJ0|1|5|C|1176
*
8OJ0|1|5|G|1185
8OJ0|1|5|U|1186
8OJ0|1|5|G|1187
8OJ0|1|5|C|1188
8OJ0|1|5|G|1189

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5