IL_8OJ5_110

3D structure

PDB id

8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8OJ5|1|5|A|3785, 8OJ5|1|5|C|3791, 8OJ5|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ5_110 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.0949

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8OJ5|1|5|C|3781
8OJ5|1|5|C|3782
8OJ5|1|5|A|3783
8OJ5|1|5|A|3784
8OJ5|1|5|A|3785
8OJ5|1|5|U|3786
8OJ5|1|5|G|3787
8OJ5|1|5|C|3788
8OJ5|1|5|C|3789
8OJ5|1|5|U|3790
8OJ5|1|5|C|3791
8OJ5|1|5|G|3792
*
8OJ5|1|5|C|3808
8OJ5|1|5|G|3809
8OJ5|1|5|C|3810
8OJ5|1|5|G|3811

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

E3 UFM1-protein ligase 1