IL_8OJ5_117
3D structure
- PDB id
- 8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUGUAGAAUAAG*UAC
- Length
- 16 nucleotides
- Bulged bases
- 8OJ5|1|5|A|3965, 8OJ5|1|5|A|3966
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OJ5_117 not in the Motif Atlas
- Geometric match to IL_5TBW_378
- Geometric discrepancy: 0.2139
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8OJ5|1|5|G|3955
8OJ5|1|5|G|3956
8OJ5|1|5|U|3957
8OJ5|1|5|G|3958
8OJ5|1|5|U|3959
8OJ5|1|5|A|3960
8OJ5|1|5|G|3961
8OJ5|1|5|A|3962
8OJ5|1|5|A|3963
8OJ5|1|5|U|3964
8OJ5|1|5|A|3965
8OJ5|1|5|A|3966
8OJ5|1|5|G|3967
*
8OJ5|1|5|U|4055
8OJ5|1|5|A|4056
8OJ5|1|5|C|4057
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Lz
- 60S ribosomal protein L10a
Coloring options: