IL_8OJ5_129

3D structure

PDB id

8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8OJ5|1|5|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ5_129 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.0938

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8OJ5|1|5|G|4405
8OJ5|1|5|U|4406
8OJ5|1|5|G|4407
*
8OJ5|1|5|U|4435
8OJ5|1|5|U|4436
8OJ5|1|5|U|4437
8OJ5|1|5|U|4438
8OJ5|1|5|U|4439

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LI

Ribosomal protein uL16-like