IL_8OJ5_174
3D structure
- PDB id
- 8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGCU*GAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OJ5_174 not in the Motif Atlas
- Homologous match to IL_8C3A_111
- Geometric discrepancy: 0.1093
- The information below is about IL_8C3A_111
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50458.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8OJ5|1|5|G|4400
8OJ5|1|5|G|4401
8OJ5|1|5|C|4402
8OJ5|1|5|U|4403
*
8OJ5|1|5|G|4440
8OJ5|1|5|A|4441
8OJ5|1|5|U|4442
8OJ5|1|5|C|4443
8OJ5|1|5|C|4444
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- E3 UFM1-protein ligase 1
- Chain LB
- 60S ribosomal protein L3
- Chain LI
- Ribosomal protein uL16-like
- Chain Lb
- 60S ribosomal protein L29
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