IL_8OJ8_085

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OJ8_085 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0976

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8OJ8|1|5|G|2358
8OJ8|1|5|U|2359
8OJ8|1|5|A|2360
8OJ8|1|5|G|2361
8OJ8|1|5|U|2362
8OJ8|1|5|A|2363
8OJ8|1|5|G|2364
*
8OJ8|1|5|C|3858
8OJ8|1|5|G|3859
8OJ8|1|5|A|3860
8OJ8|1|5|A|3861
8OJ8|1|5|A|3862
8OJ8|1|5|C|3863

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17