IL_8OJ8_142
3D structure
- PDB id
- 8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCAU*AGGCG
- Length
- 9 nucleotides
- Bulged bases
- 8OJ8|1|5|C|4720
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OJ8_142 not in the Motif Atlas
- Homologous match to IL_8C3A_123
- Geometric discrepancy: 0.2162
- The information below is about IL_8C3A_123
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
8OJ8|1|5|C|4582
8OJ8|1|5|C|4583
8OJ8|1|5|A|4584
8OJ8|1|5|U|4585
*
8OJ8|1|5|A|4717
8OJ8|1|5|G|4718
8OJ8|1|5|G|4719
8OJ8|1|5|C|4720
8OJ8|1|5|G|4721
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LO
- 60S ribosomal protein L13a
Coloring options: