IL_8OJ8_155
3D structure
- PDB id
- 8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUCCUG*CGUCAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OJ8_155 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3968
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8OJ8|1|5|G|4884
8OJ8|1|5|U|4885
8OJ8|1|5|C|4886
8OJ8|1|5|C|4887
8OJ8|1|5|U|4888
8OJ8|1|5|G|4889
*
8OJ8|1|5|C|4930
8OJ8|1|5|G|4931
8OJ8|1|5|U|4932
8OJ8|1|5|C|4933
8OJ8|1|5|A|4934
8OJ8|1|5|C|4935
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LE
- 60S ribosomal protein L6
- Chain LM
- 60S ribosomal protein L14
- Chain LO
- 60S ribosomal protein L13a
Coloring options: