IL_8ONZ_002

3D structure

PDB id

8ONZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

UGAAC*GGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ONZ_002 not in the Motif Atlas

Geometric match to IL_4LFB_037

Geometric discrepancy: 0.337

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8ONZ|1|1|U|1484
8ONZ|1|1|G|1485
8ONZ|1|1|A|1486
8ONZ|1|1|A|1487
8ONZ|1|1|C|1488
*
8ONZ|1|1|G|1496
8ONZ|1|1|G|1497
8ONZ|1|1|A|1498

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LR

Ribosomal protein L19