IL_8ONZ_007

3D structure

PDB id

8ONZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CCUG*CGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ONZ_007 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.3719

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8ONZ|1|1|C|1958
8ONZ|1|1|C|1959
8ONZ|1|1|U|1960
8ONZ|1|1|G|1961
*
8ONZ|1|1|C|2010
8ONZ|1|1|G|2011
8ONZ|1|1|G|2012
8ONZ|1|1|G|2013

Current chains

Chain 1

28S rRNA

Nearby chains