IL_8OO0_006
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_006 not in the Motif Atlas
- Homologous match to IL_5TBW_006
- Geometric discrepancy: 0.1205
- The information below is about IL_5TBW_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OO0|1|1|C|83
8OO0|1|1|C|84
8OO0|1|1|U|85
8OO0|1|1|A|86
8OO0|1|1|G|87
8OO0|1|1|U|88
8OO0|1|1|A|89
8OO0|1|1|A|90
*
8OO0|1|1|U|98
8OO0|1|1|G|99
8OO0|1|1|A|100
8OO0|1|1|A|101
8OO0|1|1|G|102
8OO0|1|1|C|103
8OO0|1|1|G|104
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain LQ
- Ribosomal protein L18-like protein
- Chain La
- Ribosomal protein L18e/L15P domain-containing protein
Coloring options: