IL_8OO0_033
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8OO0|1|1|A|915, 8OO0|1|1|G|919
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_033 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.133
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8OO0|1|1|G|787
8OO0|1|1|A|788
8OO0|1|1|A|789
8OO0|1|1|A|790
8OO0|1|1|G|791
*
8OO0|1|1|C|913
8OO0|1|1|U|914
8OO0|1|1|A|915
8OO0|1|1|G|916
8OO0|1|1|U|917
8OO0|1|1|A|918
8OO0|1|1|G|919
8OO0|1|1|C|920
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain La
- Ribosomal protein L18e/L15P domain-containing protein
- Chain Lj
- Ribosomal protein L37
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