IL_8OO0_061
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUUGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 8OO0|1|1|U|1204
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_061 not in the Motif Atlas
- Homologous match to IL_8C3A_057
- Geometric discrepancy: 0.1949
- The information below is about IL_8C3A_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8OO0|1|1|U|1201
8OO0|1|1|C|1202
8OO0|1|1|U|1203
8OO0|1|1|U|1204
8OO0|1|1|G|1205
8OO0|1|1|A|1206
8OO0|1|1|C|1207
8OO0|1|1|A|1208
8OO0|1|1|G|1209
*
8OO0|1|1|C|1266
8OO0|1|1|C|1267
8OO0|1|1|G|1268
8OO0|1|1|A|1269
8OO0|1|1|A|1270
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain LS
- 60S ribosomal protein L20
- Chain Lm
- Ubiquitin-like domain-containing protein
- Chain Ls
- 60S acidic ribosomal protein P0
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