IL_8OO0_171

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAUC*GGAG

Length

10 nucleotides

Bulged bases

8OO0|1|2|G|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_171 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.1345

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8OO0|1|2|C|440
8OO0|1|2|C|441
8OO0|1|2|A|442
8OO0|1|2|A|443
8OO0|1|2|U|444
8OO0|1|2|C|445
*
8OO0|1|2|G|455
8OO0|1|2|G|456
8OO0|1|2|A|457
8OO0|1|2|G|458

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SY

40S ribosomal protein S24