IL_8OO0_181

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8OO0|1|2|A|616, 8OO0|1|2|A|617, 8OO0|1|2|A|618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_181 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.212

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

8OO0|1|2|G|613
8OO0|1|2|U|614
8OO0|1|2|U|615
8OO0|1|2|A|616
8OO0|1|2|A|617
8OO0|1|2|A|618
8OO0|1|2|A|619
*
8OO0|1|2|U|1101
8OO0|1|2|C|1102

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein s23-like protein

Chain Sa

40S ribosomal protein S26