IL_8OO0_206

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_206 not in the Motif Atlas

Homologous match to IL_8C3A_446

Geometric discrepancy: 0.109

The information below is about IL_8C3A_446

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8OO0|1|2|G|1108
8OO0|1|2|G|1109
8OO0|1|2|A|1110
8OO0|1|2|G|1111
8OO0|1|2|U|1112
8OO0|1|2|A|1113
8OO0|1|2|U|1114
8OO0|1|2|G|1115
*
8OO0|1|2|U|1126
8OO0|1|2|G|1127
8OO0|1|2|A|1128
8OO0|1|2|A|1129
8OO0|1|2|A|1130
8OO0|1|2|C|1131

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41-A

Chain SX

40S ribosomal protein s23-like protein