IL_8OO0_218
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 8OO0|1|2|U|1428, 8OO0|1|2|G|1431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_218 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.1648
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8OO0|1|2|U|1273
8OO0|1|2|G|1274
8OO0|1|2|G|1275
*
8OO0|1|2|U|1426
8OO0|1|2|C|1427
8OO0|1|2|U|1428
8OO0|1|2|G|1429
8OO0|1|2|U|1430
8OO0|1|2|G|1431
8OO0|1|2|A|1432
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SD
- 40S ribosomal protein S3-like protein
- Chain SK
- 40S ribosomal protein s10-like protein
- Chain SU
- 40S ribosomal protein S20-like protein
- Chain Sd
- 40S ribosomal protein S29
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