IL_8OO0_229

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUACUCC*GUAAUC

Length

13 nucleotides

Bulged bases

8OO0|1|2|A|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_229 not in the Motif Atlas

Homologous match to IL_8P9A_449

Geometric discrepancy: 0.4819

The information below is about IL_8P9A_449

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22564.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8OO0|1|2|G|1484
8OO0|1|2|U|1485
8OO0|1|2|A|1486
8OO0|1|2|C|1487
8OO0|1|2|U|1488
8OO0|1|2|C|1489
8OO0|1|2|C|1490
*
8OO0|1|2|G|1509
8OO0|1|2|U|1510
8OO0|1|2|A|1511
8OO0|1|2|A|1512
8OO0|1|2|U|1513
8OO0|1|2|C|1514

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S3-like protein

Chain SU

40S ribosomal protein S20-like protein

Chain Sd

40S ribosomal protein S29