IL_8OO0_252
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUAGUAC*GGAAUCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_252 not in the Motif Atlas
- Homologous match to IL_8C3A_148
- Geometric discrepancy: 0.3281
- The information below is about IL_8C3A_148
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.9
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8OO0|1|3|G|72
8OO0|1|3|U|73
8OO0|1|3|U|74
8OO0|1|3|A|75
8OO0|1|3|G|76
8OO0|1|3|U|77
8OO0|1|3|A|78
8OO0|1|3|C|79
*
8OO0|1|3|G|99
8OO0|1|3|G|100
8OO0|1|3|A|101
8OO0|1|3|A|102
8OO0|1|3|U|103
8OO0|1|3|C|104
8OO0|1|3|C|105
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LI
- 60S ribosomal protein L10-like protein
- Chain LS
- 60S ribosomal protein L20
Coloring options: