IL_8OO0_292

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACCA*UCCCUG

Length

11 nucleotides

Bulged bases

8OO0|1|2|C|1155, 8OO0|1|2|C|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_292 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3702

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8OO0|1|2|C|1153
8OO0|1|2|A|1154
8OO0|1|2|C|1155
8OO0|1|2|C|1156
8OO0|1|2|A|1157
*
8OO0|1|2|U|1613
8OO0|1|2|C|1614
8OO0|1|2|C|1615
8OO0|1|2|C|1616
8OO0|1|2|U|1617
8OO0|1|2|G|1618

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein s5-like protein

Chain SQ

40S ribosomal protein S16-like protein

Chain Sc

40S ribosomal protein S28-like protein