IL_8OO0_302
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUCG*CGAC
- Length
- 9 nucleotides
- Bulged bases
- 8OO0|1|3|U|85
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_302 not in the Motif Atlas
- Geometric match to IL_5TBW_100
- Geometric discrepancy: 0.2802
- The information below is about IL_5TBW_100
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8OO0|1|3|G|83
8OO0|1|3|G|84
8OO0|1|3|U|85
8OO0|1|3|C|86
8OO0|1|3|G|87
*
8OO0|1|3|C|92
8OO0|1|3|G|93
8OO0|1|3|A|94
8OO0|1|3|C|95
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LI
- 60S ribosomal protein L10-like protein
- Chain LS
- 60S ribosomal protein L20
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