IL_8OO0_303

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8OO0|1|1|G|1219

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OO0_303 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.2766

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8OO0|1|1|G|1217
8OO0|1|1|U|1218
8OO0|1|1|G|1219
8OO0|1|1|G|1220
8OO0|1|1|C|1221
*
8OO0|1|1|G|1233
8OO0|1|1|A|1234
8OO0|1|1|A|1235
8OO0|1|1|U|1236
8OO0|1|1|C|1237

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LK

60S ribosomal protein L12-like protein