IL_8OO0_307
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUCAA*UGACAACG
- Length
- 14 nucleotides
- Bulged bases
- 8OO0|1|2|U|310, 8OO0|1|2|C|348
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OO0_307 not in the Motif Atlas
- Homologous match to IL_8CRE_408
- Geometric discrepancy: 0.1456
- The information below is about IL_8CRE_408
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8OO0|1|2|U|308
8OO0|1|2|A|309
8OO0|1|2|U|310
8OO0|1|2|C|311
8OO0|1|2|A|312
8OO0|1|2|A|313
*
8OO0|1|2|U|345
8OO0|1|2|G|346
8OO0|1|2|A|347
8OO0|1|2|C|348
8OO0|1|2|A|349
8OO0|1|2|A|350
8OO0|1|2|C|351
8OO0|1|2|G|352
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11-like protein
- Chain SX
- 40S ribosomal protein s23-like protein
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