IL_8OVE_004
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- U(OMC)AAG*CGAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8OVE|1|AA|A|566
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_004 not in the Motif Atlas
- Homologous match to IL_8C3A_394
- Geometric discrepancy: 0.1645
- The information below is about IL_8C3A_394
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_30569.1
- Basepair signature
- cWW-cWW-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OVE|1|AA|U|65
8OVE|1|AA|OMC|66
8OVE|1|AA|A|67
8OVE|1|AA|A|68
8OVE|1|AA|G|69
*
8OVE|1|AA|C|564
8OVE|1|AA|G|565
8OVE|1|AA|A|566
8OVE|1|AA|A|567
8OVE|1|AA|A|568
8OVE|1|AA|A|569
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A1
- 40S ribosomal protein S4
- Chain A6
- Probable 40S ribosomal protein S9
Coloring options: