IL_8OVE_012
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 8OVE|1|AA|U|202
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_012 not in the Motif Atlas
- Homologous match to IL_8C3A_402
- Geometric discrepancy: 0.1089
- The information below is about IL_8C3A_402
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.4
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
8OVE|1|AA|G|175
8OVE|1|AA|G|176
8OVE|1|AA|A|177
8OVE|1|AA|U|178
8OVE|1|AA|A|179
8OVE|1|AA|A|180
8OVE|1|AA|C|181
*
8OVE|1|AA|G|197
8OVE|1|AA|C|198
8OVE|1|AA|U|199
8OVE|1|AA|A|200
8OVE|1|AA|A|201
8OVE|1|AA|U|202
8OVE|1|AA|A|203
8OVE|1|AA|C|204
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A3
- 40S ribosomal protein S6
- Chain AT
- 40S ribosomal protein S24
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