IL_8OVE_013

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCUC*GAC

Length

7 nucleotides

Bulged bases

8OVE|1|AA|C|221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_013 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1977

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8OVE|1|AA|G|220
8OVE|1|AA|C|221
8OVE|1|AA|U|222
8OVE|1|AA|C|223
*
8OVE|1|AA|G|272
8OVE|1|AA|A|273
8OVE|1|AA|C|274

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A5

40S ribosomal protein S8

Chain Az

RNA-binding protein