IL_8OVE_026

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUC*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_026 not in the Motif Atlas

Geometric match to IL_4WF9_020

Geometric discrepancy: 0.1734

The information below is about IL_4WF9_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8OVE|1|AA|G|541
8OVE|1|AA|U|542
8OVE|1|AA|C|543
*
8OVE|1|AA|G|554
8OVE|1|AA|A|555
8OVE|1|AA|U|556

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain AT

40S ribosomal protein S24