IL_8OVE_027

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUGG*CCAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_027 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2554

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

8OVE|1|AA|U|648
8OVE|1|AA|U|649
8OVE|1|AA|G|650
8OVE|1|AA|G|651
*
8OVE|1|AA|C|691
8OVE|1|AA|C|692
8OVE|1|AA|A|693
8OVE|1|AA|A|694

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A6

Probable 40S ribosomal protein S9

Chain AS

40S ribosomal protein S23, putative

Chain AY

40S ribosomal protein S30