IL_8OVE_028
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AGGACAAGUC*GCU
- Length
- 13 nucleotides
- Bulged bases
- 8OVE|1|AA|U|660
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_028 not in the Motif Atlas
- Geometric match to IL_8C3A_407
- Geometric discrepancy: 0.2993
- The information below is about IL_8C3A_407
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.3
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 49
Unit IDs
8OVE|1|AA|A|652
8OVE|1|AA|G|653
8OVE|1|AA|G|654
8OVE|1|AA|A|655
8OVE|1|AA|C|656
8OVE|1|AA|A|657
8OVE|1|AA|A|658
8OVE|1|AA|G|659
8OVE|1|AA|U|660
8OVE|1|AA|C|661
*
8OVE|1|AA|G|688
8OVE|1|AA|C|689
8OVE|1|AA|U|690
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A6
- Probable 40S ribosomal protein S9
- Chain AP
- 40S ribosomal protein S2, putative
- Chain AS
- 40S ribosomal protein S23, putative
- Chain AX
- 40S ribosomal protein S3, putative
- Chain AY
- 40S ribosomal protein S30
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