IL_8OVE_031
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_031 not in the Motif Atlas
- Homologous match to IL_8C3A_428
- Geometric discrepancy: 0.1346
- The information below is about IL_8C3A_428
- Detailed Annotation
- tSH-tWH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8OVE|1|AA|C|729
8OVE|1|AA|G|730
8OVE|1|AA|U|731
8OVE|1|AA|A|732
8OVE|1|AA|G|733
*
8OVE|1|AA|U|1245
8OVE|1|AA|C|1246
8OVE|1|AA|A|1247
8OVE|1|AA|A|1248
8OVE|1|AA|G|1249
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain AE
- 40S ribosomal proteins S11, putative
- Chain AG
- 40S ribosomal protein S13, putative
- Chain AJ
- 40S ribosomal protein S15a, putative
- Chain AS
- 40S ribosomal protein S23, putative
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
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