IL_8OVE_035

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUACC*GACGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_035 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3782

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8OVE|1|AA|G|763
8OVE|1|AA|U|764
8OVE|1|AA|A|765
8OVE|1|AA|C|766
8OVE|1|AA|C|767
*
8OVE|1|AA|G|783
8OVE|1|AA|A|785
8OVE|1|AA|C|786
8OVE|1|AA|G|787
8OVE|1|AA|U|788

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain AC

40S ribosomal protein SA

Chain AR

40S ribosomal protein S21, putative