IL_8OVE_045
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUACU*AAGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_045 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3835
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
8OVE|1|AA|G|1162
8OVE|1|AA|U|1163
8OVE|1|AA|A|1164
8OVE|1|AA|C|1165
8OVE|1|AA|U|1166
*
8OVE|1|AA|A|1200
8OVE|1|AA|A|1201
8OVE|1|AA|G|1202
8OVE|1|AA|A|1203
8OVE|1|AA|C|1204
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A0
- 40S ribosomal protein S3a
- Chain AH
- 40S ribosomal protein S14
- Chain AV
- 40S ribosomal protein S26
- Chain Be
- 60S ribosomal protein L2, putative
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