IL_8OVE_046

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUCAG*CUUAGACC

Length

13 nucleotides

Bulged bases

8OVE|1|AA|A|1190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_046 not in the Motif Atlas

Geometric match to IL_6UFM_001

Geometric discrepancy: 0.1388

The information below is about IL_6UFM_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

8OVE|1|AA|G|1172
8OVE|1|AA|U|1173
8OVE|1|AA|C|1174
8OVE|1|AA|A|1175
8OVE|1|AA|G|1176
*
8OVE|1|AA|C|1187
8OVE|1|AA|U|1188
8OVE|1|AA|U|1189
8OVE|1|AA|A|1190
8OVE|1|AA|G|1191
8OVE|1|AA|A|1192
8OVE|1|AA|C|1193
8OVE|1|AA|C|1194

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A0

40S ribosomal protein S3a

Chain AH

40S ribosomal protein S14

Chain BB

Large subunit ribosomal RNA; LSU rRNA