IL_8OVE_051

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUG*UUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_051 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1449

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8OVE|1|AA|U|1321
8OVE|1|AA|U|1322
8OVE|1|AA|G|1323
*
8OVE|1|AA|U|1474
8OVE|1|AA|U|1475
8OVE|1|AA|A|1476

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A0

40S ribosomal protein S3a

Chain AG

40S ribosomal protein S13, putative

Chain AV

40S ribosomal protein S26

Chain AW

40S ribosomal protein S27, putative