IL_8OVE_052
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGGGA*UUUCU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_052 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.2655
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
8OVE|1|AA|G|1323
8OVE|1|AA|G|1324
8OVE|1|AA|G|1325
8OVE|1|AA|G|1326
8OVE|1|AA|A|1327
*
8OVE|1|AA|U|1470
8OVE|1|AA|U|1471
8OVE|1|AA|U|1472
8OVE|1|AA|C|1473
8OVE|1|AA|U|1474
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A0
- 40S ribosomal protein S3a
- Chain AC
- 40S ribosomal protein SA
- Chain AG
- 40S ribosomal protein S13, putative
- Chain AW
- 40S ribosomal protein S27, putative
Coloring options: