IL_8OVE_053

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AG*CGU

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_053 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2152

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8OVE|1|AA|A|1327
8OVE|1|AA|G|1396
*
8OVE|1|AA|C|1468
8OVE|1|AA|G|1469
8OVE|1|AA|U|1470

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A0

40S ribosomal protein S3a

Chain AC

40S ribosomal protein SA

Chain AW

40S ribosomal protein S27, putative