IL_8OVE_061

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_061 not in the Motif Atlas

Homologous match to IL_8C3A_451

Geometric discrepancy: 0.306

The information below is about IL_8C3A_451

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_92540.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

32

Unit IDs

8OVE|1|AA|G|1583
8OVE|1|AA|G|1584
*
8OVE|1|AA|C|1926
8OVE|1|AA|A|1927
8OVE|1|AA|C|1928

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A

HIS-THR-CYS-THR

Chain AI

40S ribosomal protein S15, putative

Chain AM

40S ribosomal protein S18, putative