IL_8OVE_067
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CCG*CA(OMG)G
- Length
- 7 nucleotides
- Bulged bases
- 8OVE|1|AA|A|1894
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_067 not in the Motif Atlas
- Geometric match to IL_6IA2_002
- Geometric discrepancy: 0.1367
- The information below is about IL_6IA2_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.5
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 238
Unit IDs
8OVE|1|AA|C|1684
8OVE|1|AA|C|1685
8OVE|1|AA|G|1686
*
8OVE|1|AA|C|1893
8OVE|1|AA|A|1894
8OVE|1|AA|OMG|1895
8OVE|1|AA|G|1896
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A8
- Putative ribosomal protein S29
- Chain AK
- 40S ribosomal protein S16, putative
- Chain AP
- 40S ribosomal protein S2, putative
- Chain AQ
- Ribosomal protein S10
- Chain AX
- 40S ribosomal protein S3, putative
Coloring options: