IL_8OVE_072

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CG*UUAG

Length

6 nucleotides

Bulged bases

8OVE|1|AA|U|1830

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_072 not in the Motif Atlas

Geometric match to IL_8S95_001

Geometric discrepancy: 0.3976

The information below is about IL_8S95_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25652.1

Basepair signature

cWW-tSS-cWW

Number of instances in this motif group

4

Unit IDs

8OVE|1|AA|C|1758
8OVE|1|AA|G|1759
*
8OVE|1|AA|U|1829
8OVE|1|AA|U|1830
8OVE|1|AA|A|1835
8OVE|1|AA|G|1836

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain AO

Ribosomal protein S19, putative