IL_8OVE_076

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AG*CGU

Length

5 nucleotides

Bulged bases

8OVE|1|AA|G|2022

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_076 not in the Motif Atlas

Geometric match to IL_3NDB_004

Geometric discrepancy: 0.3541

The information below is about IL_3NDB_004

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8OVE|1|AA|A|1944
8OVE|1|AA|G|1945
*
8OVE|1|AA|C|2021
8OVE|1|AA|G|2022
8OVE|1|AA|U|2023

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A2

40S ribosomal protein S5, putative

Chain AK

40S ribosomal protein S16, putative

Chain AM

40S ribosomal protein S18, putative

Chain AO

Ribosomal protein S19, putative

Chain AU

40S ribosomal protein S25