IL_8OVE_079

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8OVE|1|AA|C|2132, 8OVE|1|AA|A|2245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_079 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1417

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8OVE|1|AA|C|2131
8OVE|1|AA|C|2132
8OVE|1|AA|G|2133
*
8OVE|1|AA|C|2243
8OVE|1|AA|A|2244
8OVE|1|AA|A|2245
8OVE|1|AA|G|2246

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain AV

40S ribosomal protein S26

Chain Bz

Ribosomal protein L41