IL_8OVE_083

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

U(PSU)CC*G(OMG)AA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_083 not in the Motif Atlas

Geometric match to IL_4V88_461

Geometric discrepancy: 0.3027

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8OVE|1|AA|U|2145
8OVE|1|AA|PSU|2146
8OVE|1|AA|C|2147
8OVE|1|AA|C|2148
*
8OVE|1|AA|G|2226
8OVE|1|AA|OMG|2227
8OVE|1|AA|A|2228
8OVE|1|AA|A|2229

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain AS

40S ribosomal protein S23, putative

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain Bz

Ribosomal protein L41