IL_8OVE_086

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_086 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.0992

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8OVE|1|AA|G|2156
8OVE|1|AA|U|2157
8OVE|1|AA|G|2158
*
8OVE|1|AA|C|2216
8OVE|1|AA|U|2217
8OVE|1|AA|U|2218

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A5

40S ribosomal protein S8

Chain BB

Large subunit ribosomal RNA; LSU rRNA