IL_8OVE_097

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_097 not in the Motif Atlas

Geometric match to IL_7RQB_066

Geometric discrepancy: 0.1304

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

8OVE|1|BA|C|123
8OVE|1|BA|G|124
8OVE|1|BA|A|125
8OVE|1|BA|A|126
*
8OVE|1|BA|U|152
8OVE|1|BA|G|153

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain BQ

Ribosomal protein L15

Chain Bk

60S ribosomal protein L35, putative

Chain Bx

60S ribosomal protein L7a