IL_8OVE_102

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_102 not in the Motif Atlas

Geometric match to IL_4E48_002

Geometric discrepancy: 0.1393

The information below is about IL_4E48_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8OVE|1|BA|A|190
8OVE|1|BA|G|191
8OVE|1|BA|G|192
*
8OVE|1|BA|C|304
8OVE|1|BA|C|305
8OVE|1|BA|U|306

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain BC

5.8S ribosomal RNA; 5.8S rRNA

Chain BN

60S ribosomal protein L13

Chain Bk

60S ribosomal protein L35, putative